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Functional Hypothalamic Amenorrhoea

Reviewed and updated by practising UK GPs, overseen by our Clinical Advisory Officer.

🧭 When to suspect

Functional hypothalamic amenorrhoea (FHA) is the cessation of periods caused by a functional suppression of the hypothalamic–pituitary–ovarian (HPO) axis, with no structural or organic cause.

Reduced pulsatile secretion of gonadotrophin-releasing hormone (GnRH) lowers luteinising hormone (LH) and follicle-stimulating hormone (FSH), which in turn drops oestradiol and stops ovulation.

It is best understood as the body’s protective adaptation to a perceived energy or stress threat, and it accounts for roughly one third of secondary amenorrhoea in women of reproductive age.

Suspect FHA in a woman with secondary amenorrhoea – absence of periods for 3–6 months after previously regular cycles (or 6–12 months if previously oligomenorrhoeic) – in the setting of the classic triad, often in combination:

• Low energy availability (LEA – intake too low for energy expended, whether from dieting, an eating disorder, or heavy training)

• Excessive exercise

• Psychological stress

In athletes and dancers this sits within Relative Energy Deficiency in Sport (RED-S), the modern framework that replaced the older “female athlete triad” of low energy availability, menstrual dysfunction, and low bone density.

Two skills matter most in primary care:

• Confirm FHA only by exclusion – it is never a first-line label.

• Recognise that the real danger is the chronic low-oestrogen state, principally its effect on bone.

The reassuring counterpoint is that FHA is usually reversible: restoring energy balance restores the cycle.

Cause to exclude first Pointers
Pregnancy The first step in any woman with amenorrhoea – always do a urine hCG (human chorionic gonadotrophin) before anything else.
Hyperprolactinaemia

• Galactorrhoea, headache or visual change

• Drug causes (antipsychotics, metoclopramide)

• Raised prolactin

Thyroid disease

• Weight, temperature or bowel change, goitre

• Abnormal TSH (thyroid-stimulating hormone)

Polycystic ovary syndrome (PCOS)

• Oligomenorrhoea, hirsutism or acne, often higher body mass index (BMI)

• Raised free androgens

Premature ovarian insufficiency (POI)

• Under 40 with hot flushes, night sweats, vaginal dryness

• Raised FSH and LH on two occasions

Uterine/outflow (e.g. Asherman’s)

• Previous uterine surgery or instrumentation

• Normal hormone profile with absent bleeding

Functional hypothalamic amenorrhoea

• Low energy availability, weight loss, excessive exercise or stress

• Low or low-normal LH and FSH with low oestradiol – the diagnosis that remains once the above are excluded

⚠️ Common pitfall

• Confusing FHA with PCOS – both cause oligo/amenorrhoea, but they pull in opposite directions and so does their management.

• FHA typically shows a low or normal BMI, low androgens, and low gonadotrophins.

• PCOS more often shows a higher BMI, clinical or biochemical hyperandrogenism, and a raised LH.

• Labelling an underweight, over-training woman as “PCOS” risks missing a treatable energy deficit and progressive bone loss.

Source: Endocrine Society · RED-S consensus (BASEM/IOC)


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